PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A12G0608
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bZIP
Protein Properties Length: 381aa    MW: 40491.9 Da    PI: 6.527
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A12G0608genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_176.34.1e-24282344163
                  XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
       bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                  e+elkr++rkq+NRe+ArrsR+RK+ae+eeL+ kv++L +eN++L++el++l++e++kl+se+
  Gh_A12G0608 282 ERELKRQKRKQSNRESARRSRLRKQAECEELQAKVESLANENHTLRNELKKLSDECEKLTSEN 344
                  89***********************************************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077778.8E-3038130IPR012900G-box binding protein, multifunctional mosaic region
Gene3DG3DSA:1.20.5.1702.4E-20277342No hitNo description
PfamPF001701.5E-21282344IPR004827Basic-leucine zipper domain
SMARTSM003388.5E-22282346IPR004827Basic-leucine zipper domain
PROSITE profilePS5021713.38284347IPR004827Basic-leucine zipper domain
SuperFamilySSF579596.88E-12285341No hitNo description
CDDcd147021.75E-23287337No hitNo description
PROSITE patternPS000360289304IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 381 aa     Download sequence    Send to blast
MLDGTNYDSW KVLSKSGRGH TDLILDFLKL RRLHKCDMGT EEESTPAKPS KPTASTQEMP  60
TTVSYPDWST QMQAYYGAAA TPPLFASTVA SPTPHPYIWG GQHPLMPPYG TPVPYPAVYP  120
PRGVYAHPNM APMPSSARNN GADGKDRGVT KKPKGSSGSK VGESAKATSG SGNDGGSQSG  180
ESGSEGTSDR SDESNQQEVN AGKKGSFEQM LADANAQGKA AGALVPAEPI VSMPATTLNI  240
GMDLWSASPA ATGAAKTRPN ASGTVATVPA GAMMPDQWIQ DERELKRQKR KQSNRESARR  300
SRLRKQAECE ELQAKVESLA NENHTLRNEL KKLSDECEKL TSENSSIKDE LMRICGPEAI  360
SNLEQGNPSS VGEAGGDEGN G
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1298304RRSRLRK
2298305RRSRLRKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.22370.0boll| ovule
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012436919.10.0PREDICTED: G-box-binding factor 1-like isoform X1
SwissprotP427741e-112GBF1_ARATH; G-box-binding factor 1
TrEMBLA0A0B0MM500.0A0A0B0MM50_G
STRINGPOPTR_0007s12460.11e-157(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM72742643
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36730.12e-94G-box binding factor 1